Topics of PhD theses at FFBT for academic year  2009/2010
Study program Biochemistry and biotechnology
Study subprogram Biotechnology		Supervisor	Dep.
1	Biodegradation of volatile compounds in flowing gases	prof. Ing. Jan Páca, DrSc.	319
2	Comparison of metabolic activity of microorganisms degrading aromatic compounds in suspension and biofilm systems	prof. Ing. Alena Čejková, CSc.	319
3	Phenotype characteristics of biofilm forming microorganisms	doc. Ing. Jan Masák, CSc.	319
4	Modulating the biodegradation efficiency	prof. RNDr. Vladimír Jirků, DrSc.	319
5	Regulation of solvents production by the genus Clostridium bacteria	Dr. Ing. Petra Patáková	319
6	Adhesion of microalgae to solid surfaces	doc. Ing. Tomáš Brányik, Ph.D.	319
7	Physicochemical properties of beer and foam quality	doc. Ing. Tomáš Brányik, Ph.D.	319
8	Colloidal and sensory beer stability	doc. Ing. Pavel Dostálek, CSc.	319
9	Eucaryotic expression systems	prof. Ing. Karel Melzoch, CSc., škol. spec.Dr. Ing. Leona Paulová	319
10	Production of alternative fuels from biomass and wastes	prof. Ing. Karel Melzoch, CSc.	319
Study program Chemistry
Study subprogram Biochemistry
11	Detection of Enterobacter sakazakii using immunochemical principles	prof. Ing. Ladislav Fukal, CSc., škol. spec. Ing. Martina Blažková, Ph.D.	320
12	Studying of Membrane Proteins Using Mass Spectrometry	doc. Dr. Ing. Radovan Hynek	320
13	Study of retroviral proteins structure by surface mapping	doc. Dr. Ing. Radovan Hynek	320
14	Determination of proteins in insoluble materials	doc. Dr. Ing. Radovan Hynek	320
15	Biochemical and genetic aspects of heavy metal hyperaccumulation by ectomycorrhizal fungi	doc. Ing. Pavel Kotrba, Ph.D.	320
16	The role of dietary fiber and plant proteins in cholesterol resorption and metabolism	doc. Ing. Pavel Kotrba, Ph.D., MVDr. Eva Skřivanová, Ph.D.-VÚŽV v.v.i.	320
17	Phosphatidic acid and diacylglycerol-mediated signalling in the polar growth of plant cells	prof. RNDr. Olga Valentová, CSc.	320
18	Anticancer effect of plant nuclase	Ing. Petra Lipovová, Ph.D.	320
19	Taxonomic variants of isoflavone-synthase	doc. RNDr. Oldřich Lapčík, Dr., RNDr. David Honys. Ph.D.-ÚEB AV ČR	342
Study program Microbiology
Study subprogram Microbiology
20	Development of immunochemical methods for detection and characterisation of the Enterobacter sakazakii strains	Ing. Igor Hochel, CSc.	320
21	Preparation of transgenic plants with high accumulation of heavy metals	doc. Ing. Tomáš Macek, CSc., škol. spec. doc. Ing. Pavel Kotrba, Ph.D.	320
22	Preparation of transgenic organisms for production of therapeutically important compounds	prof. Dr. Ing. Martina Macková	320
23		prof. Dr. Ing. Martina Macková, škol. spec.Mgr. Daniel Svozil, Ph.D.	320
24	RNA Structure Analysis	prof. Dr. Ing. Martina Macková	320
25	Interactions of microbes and plants in the environment contaminated by organic compounds	prof. Dr. Ing. Martina Macková	320
26	Mechanism of intracellular transport of retroviral proteins	prof. Ing. Tomáš Ruml, CSc.	320
27	Role of Ubl-5 protein in cellular processes	prof. Ing. Tomáš Ruml, CSc.	320
28	Mechanism of retroviral budding	prof. Ing. Tomáš Ruml, CSc.	320
29	Biological importance of SUMO chains and mechanism of their formation	prof. Ing. Tomáš Ruml, CSc.	320
30	Metabolic models in physiological control of mcl-PHA production by the strain Pseudomonas putida	prof. Ing. Kateřina Demnerová, CSc., škol. spec. prof. Ing. Jan Náhlík, CSc.	320
31	Genotypová charakterizace enterotoxinogenních kmenů Staphylococcus aureus (SA)	prof. Ing. Kateřina Demnerová, CSc., škol. spec. Ing. Ivana Melenová, Ph.D..	320
32	Investigation of  gene expression in crop species subjected to combined stresses	prof. Ing. Kateřina Demnerová, CSc., škol. spec. RNDr. Jaroslava Ovesná, CSc.	320
33	Development of DNA macrochip in real-time PCR format pro quantification of toxigenic fungi	prof. Ing. Kateřina Demnerová, CSc., škol. spec. RNDr. Jaroslava Ovesná, CSc.	320
Study program Food chemistry and technology
Study subprogram Food technology
34	Nanofiltration in food technologies and biotechnologies – modern ways of isolation and purification of biologically and nutritionally valuable substances	prof. Ing. Zdeněk Bubník, CSc., škol.spec. Ing. Vladimír Pour, CSc.	321
35	Thermal and spectroscopic analysis of chocolates and non-chocolate confectioneries	prof. Ing. Jana Čopíková, CSc.	321
36	Preparation of perspective materials containing biologically active polysaccharides	prof. Ing. Jana Čopíková, CSc., škol. spec.Ing. Miroslav Novák, CSc.	321
37	New methods of sugar analysis in food authentication	prof. Ing. Zdeněk Bubník, CSc., škol. spec. Ing. Andrea Hinková, Ph.D.	321
38	Optimization of Wheat Flour and Pasta Quality Relation	doc. Ing. Marie Hrušková, CSc.	321
39	A prediction of Cereal Products Quality	doc. Ing. Marie Hrušková, CSc.	321
40	Preparation of polysaccharide derivatives with physiological effects	Mgr. Andriy Synytsya, Ph.D., škol.spec. prof. Ing. Milan Marounek, DrSc. - ÚŽFG AV ČR	321
41	Enzyme and instrumental methods for native and modified starch identification	Ing. Evžen Šárka, CSc.	321
42	Influence of plant abiotic and biotic stress on technological properties of seeds	Ing. Evžen Šárka, CSc., škol. spec. Ing. Ladislav Bláha, CSc. -VÚRV	321
43	Facultatively heterofermentative lactobacilli for fermented milk production	doc. Ing. Milada Plocková, CSc., škol.spec. Ing.Šárka Horáčková, CSc.	322
44	Antilisterial activity of lactic acid bacteria	Ing. Eva Šviráková, Ph.D.	322
45	Application properties of emulsifying salts for production of processed cheeses	Ing. Jiří Štětina, CSc., doc. Ing. Ladislav Čurda, CSc.	322
46	Application of capillary electrophoresis for analysis of milk and milk products components	doc. Ing. Ladislav Čurda, CSc.	322
Study program Food chemistry and technology
Study subprogram Food chemistry and analysis
47	Lipid changes during thermal processing	doc. Ing. Jana Dostálová, CSc.	323
48	Lipid composition in food and its nutritional evaluation	doc. Ing. Jana Dostálová, CSc.	323
49	Non digestible carbohydrates in food	doc. Ing. Jana Dostálová, CSc.	323
50	Changes of trace elements speciation in foodstuffs of plant origin	doc. Dr. Ing. Richard Koplík	323
51	3-Chloropropane-1,2-diol in milk and dairy product	prof. Ing. Jan Velíšek, DrSc.	323
52	The study of some taste by sensory methods	Dr. Ing. Zdeňka Panovská	323
53	Novel analytical strategies for assessment of the quality / safety of cereal-based products	prof. Ing. Jana Hajšlová, CSc.	323
54	Novel strategies for traceability in food production chain	prof. Ing. Jana Hajšlová, CSc.	323
55	Metabolomic profiling - a powerful tool in food quality  authenticity control	prof. Ing. Jana Hajšlová, CSc.	323
56	Ambient mass spectrometry in food analysis	prof. Ing. Jana Hajšlová, CSc.	323
57	Mycotoxins in foods and feeds: the impact of processing technology	prof. Ing. Jana Hajšlová, CSc.	323
58	Processing contaminants in starch-rich foodstuffs	prof. Ing. Jana Hajšlová, CSc.	323
59	Novel approaches to comprehensive monitoring of organic environmental contaminants in food chains	prof. Ing. Jana Hajšlová, CSc.	323
60	Antioxidant effectiveness of some natural food components	doc. Ing. J. Pánek, CSc.	323
Study program Food chemistry and technology
Study subprogram Food technology
61	Detection of adulteration of meat and meat products	prof. Ing. Petr Pipek, CSc.	324
62	Freshness monitoring of meat using mass spectrophotometry	prof. Ing. Petr Pipek, CSc.	324
63	Use of natural substances to assure quality and shelf-life of meat and meat products	prof. Ing. Petr Pipek, CSc.	324
64	Influence of printing quality on the safety of food packaging materials.	doc. Ing. Jaroslav Dobiáš, CSc.	324
65	Active food packages designed using nanotechnology.	doc. Ing. Jaroslav Dobiáš, CSc.	324
66	Optimization of food safety management procedures based on the risk assessment	doc. Ing. Michal Voldřich, CSc.	324
67	Causes and prevention of sensory defects of foodstuffs	doc. Ing. Michal Voldřich, CSc.	324
68	Evaluation of recent situation in the communication of nutrition information to the general population	doc. Ing. Michal Voldřich, CSc.	324
69	Properties and prevention of  biofilms in food plants	Dr. Ing. Miroslav Čeřovský	324
70	Risk associated with shelf life extending of ready-to-eat foods.	Dr. Ing. Miroslav Čeřovský	324
71	Inactivation parameters of technologically relevant microflora	Dr. Ing. Miroslav Čeřovský	324
Study program Chemistry
Study subprogram Organic chemistry
72	Bifunctional inhibitors of galactosyltransferases	prof. Ing. Jitka Moravcová, CSc.	342
73	Supramolecular synthons constructed with chiral natural compounds	prof. RNDr. Pavel Drašar, DSc.	342
74	Functional steroidal derivatives of heterocycles	prof. RNDr. Pavel Drašar, DSc.	342
75	New C-disaccharides for the construction of ligands preventing cell-pathogen interaction	doc. Ing. Ladislav Kniežo, CSc.	342
76	New sources of bioactive polyphenols	doc. RNDr. Oldřich Lapčík, Dr., škol. spec. doc. Ing. Ladislav Kokoška, Ph.D. - ITS, ČZU	342
77	Novel Chiral Zwitterionic Organocatalysts for Asymmetric Addition of Silylated Nucleophiles to Carbonyl Group	prof. RNDr. Pavel Drašar, DSc., škol. spec. Dr. Ilya Lyapkalo - ÚOCHB AV ČR	342
78	Alken-1-yl Triphenylphosphonium Salts as Versatile and Convenient Building Blocks in Organic Synthesis	prof. RNDr. Pavel Drašar, DSc., škol. spec. Dr. Ilya Lyapkalo - ÚOCHB AV ČR	342
Topics of PhD theses at Contractual Institutes for academic year  2009/2010
Study program Biochemistry and biotechnology
Study subprogram Biotechnology		Školitel	Ústav
79	Bioluminescent bioreporters for construction of optical sensors of pollution	Ing. Gabriela Kuncová, CSc.	ÚCHP AV ČR
80	Inorganic/organic nanostructured biocatalysts	Ing. Gabriela Kuncová, CSc.	ÚCHP AV ČR
81	Enzymatic reactions in supercritical CO2	Ing. Helena Sovová, CSc.	ÚCHP AV ČR
Study program Chemistry
Study subprogram Biochemistry
82	Nucleic acid-protein recognition	Ing. Peter Šebo, CSc., Ing. Bohdan Schneider, CSc.	BTÚ AV ČR
83	Structure-activity relationships of specific protein binders and their rational design by tools of crystallography and bioinformatics	Ing. Peter Šebo, CSc., Ing. Bohdan Schneider, CSc.	BTÚ AV ČR
84	New derived protein scaffolds to select specific binders using methods of protein engineering	Ing. Peter Šebo, CSc.	BTÚ AV ČR
85	Design of hybrid protein structures for molecular biology based on small protein and structural polypeptides scaffolds by molecular modeling and bioinformatics methods	Ing. Peter Šebo, CSc., RNDr. Jiří Vondrášek, CSc.	BTÚ AV ČR
86	Protein-protein interaction analysis	Ing. Peter Šebo, CSc., Ing. Hana Petroková, PhD	BTÚ AV ČR
87	Study of mitochondrial gene expression in a model plant  Silene vulgaris	RNDr. Helena Štorchová, CSc.	ÚEB AV ČR
88	The analysis of the gene regulatory network controlling flowering induction in a short-day species Chenopodium rubrum and C. quinoa	RNDr. Helena Štorchová, CSc.	ÚEB AV ČR
89	Digestive cathepsins of blood-feeding parasites	Mgr. Martin Horn, CSc.	ÚOCHB AV ČR
90	New electrolyte systems for analysis, purification and characterization of biomolecules by capillary and free-flow electromigration methods	RNDr. Václav Kašička, CSc.	ÚOCHB AV ČR
91	Regulation of proteolysis in ticks	RNDr. Michael Mareš, CSc.	ÚOCHB AV ČR
92	Study of molecular protein-protein interactions on the model of  mutant huntingtin aggregates	prof. MVDr. Jan Motlík, DrSc.	ÚŽFG AV ČR
93	Magnetic biocomposite materials and their applications	prof. Ing. Ivo Šafařík, DrSc.	ÚSBE AV ČR - ČB
94	Magnetic separation techniques for the detection and determination of biologically active compounds and xenobiotics	prof. Ing. Ivo Šafařík, DrSc.	ÚSBE AV ČR - ČB
Study program Microbiology
Study subprogram Microbiology
95	Characteriation of enzymes involved in biosynthesis of fatty acids	Ing. Iva Pichová, CSc.	ÚOCHB AV ČR
96	Enzyme-mediated transformations of plant oils	Ing. Marie Zarevúcka, CSc., doc. Ing. Zdeněk Wimmer, DrSc. -ÚEB AV ČR	ÚOCHB AV ČR
97	Enzymatic reactions in supercritical fluids	Ing. Marie Zarevúcka, CSc.	ÚOCHB AV ČR
98	Aging in yeast	doc. Ing. Alena Pichová, CSc.	MBÚ AV ČR
Study program Chemistry
Study subprogram Organic chemistry
98	New approaches to metabolite research in insects	RNDr. Petr Šimek, CSc.	BC-ENTÚ AV ČR, ČB
99	New approaches to metabolite analysis in biofluids	RNDr. Petr Šimek, CSc.	BC-ENTÚ AV ČR, ČB
100	Self-aggregative supramolecular systems based on steroid compounds	doc. Ing. Zdeněk Wimmer, CSc., Prof. RNDr. Pavel Drašar, DSc.	ÚEB AV ČR
101	Enzyme-mediated transformations of plant extracts under conventional conditions and in supercritical carbon dioxide	doc. Ing. Zdeněk Wimmer, CSc., Prof. RNDr. Pavel Drašar, DSc.	ÚEB AV ČR
102	Pharmacologically important components of plants	doc. Ing. Zdeněk Wimmer, CSc., prof. RNDr. Pavel Drašar, DSc.	ÚEB AV ČR
103	The Development of  CDK Inhibitors with Cytostatic and Antiinflamatory Effects Derived from Substituted Pyrazolo[4.3-d]pyrimidines	doc. Ing. Libor Havlíček, CSc., prof. Ing. Jitka Moravcová, CSc.	ÚEB AV ČR
104	Peptide Conformational Studies	doc. RNDr. Petr Bouř, CSc.	ÚOCHB AV ČR
105	Magnetic Circular Dichroism	doc. RNDr. Petr Bouř, CSc.	ÚOCHB AV ČR
106	Fluorescent labeled antimicrobial peptides: Synthesis and application for the study of action mechanism	RNDr. Václav Čeřovský, CSc.	ÚOCHB AV ČR
107	Introduction of the double bond to brassinosteroides (plant growth hormones) to enable their labeling by tritium and modeling of the tritiation reaction using deuterium	doc. RNDr. Tomáš Elbert, CSc.	ÚOCHB AV ČR
108	Synthesis of model nucleosides mimicking transition states of DNA methyltransferases and DNA glykosylases and their incorporation to DNA	doc. Ing. Michal Hocek, DSc.	ÚOCHB AV ČR
109	Combination of enzymatic incorporations of modified nucleoside triphosphates with enzymatic ligations and endonuclease cleavages in the construction of functionalized nucleic acids	doc. Ing. Michal Hocek, DSc.	ÚOCHB AV ČR
110	Synthesis of novel types of substituted and annulated 7-deazapurine nucleosides and nucleotides with potential cytostatic activity	doc. Ing. Michal Hocek, DSc.	ÚOCHB AV ČR
111	Cyclodextrin duplexes in supramolecular self-assembly	Mgr. Tomáš Kraus, Ph.D.	ÚOCHB AV ČR
112	Chromatographic methods in biosynthetic studies of insect pheromones	doc. RNDr. Irena Valterová, CSc.	ÚOCHB AV ČR
113	Chemical ecology of termites	doc. RNDr. Irena Valterová, CSc.	ÚOCHB AV ČR
114	Total Synthesis of Potentially Food-Derived Isoprostanes and Neuroprostanes and the Development of Immunoassays for Their in vivo Detection	Dr. habil. Ullrich Jahn	ÚOCHB AV ČR
115	Synthesis of Conformationally Restricted ß-Amino Acid Derivatives, Incorporation into Peptides and their Biological Evaluation	Dr. habil. Ullrich Jahn	ÚOCHB AV ČR
116	New Short Synthetic Approches to Anti-inflammatory Lipid Derivatives	Dr. habil. Ullrich Jahn	ÚOCHB AV ČR
117	Stereoselective Oxidative Dimerizations and Functionalizations of Enolates as a New Tool in Organic Synthesis	Dr. habil. Ullrich Jahn	ÚOCHB AV ČR
118	Aminosugar and Amino Acids by Tandem Oxidative Enolate Amination/Radical Cyclizations Organic Chemistry	Dr. habil. Ullrich Jahn	ÚOCHB AV ČR
119	Oxidative Tandem Michael Additions/Radical Cyclizations for the Stereoselective Construction of Highly Functionalized Carbocycles	Dr. habil. Ullrich Jahn	ÚOCHB AV ČR